Genomics in Aquaculture PDF
By Simon MacKenzie and Sissel Jentoft
Genomics in Aquaculture PDF is a concise, must-have reference that describes current advances within the field of genomics and their applications to aquaculture. Written in an accessible manner for anyone—non-specialists to experts alike—this book provides in-depth coverage of genomics spanning from genome sequencing, to transcriptomics and proteomics. It provides, for ease of learning, examples from key species most relevant to current intensive aquaculture practice.
Its coverage of minority species that have a specific biological interest (e.g., Pleuronectiformes) makes this book useful for countries that are developing such species. It is a robust, practical resource that covers foundational, functional, and applied aspects of genomics in aquaculture, presenting the most current information in a field of research that is rapidly growing.
- Provides the latest scientific methods and technologies to maximize efficiencies for healthy fish production, with summary tables for quick reference
- Offers an extended glossary of technical and methodological terms to help readers better understand key biological concepts
- Describes state-of-the-art technologies, such as transcriptomics and epigenomics, currently under development for future perspective of the field
- Covers minority species that have a specific biological interest (e.g., Pleuronectiformes), making the book useful to countries developing such species
Read more: Clinical and Laboratory Manual of Fish Diseases
Table of Contents
- List of Contributors
- 1: The new era of genome sequencing using high-throughput sequencing technology: generation of the first version of the Atlantic cod genome
- Abstract
- Introduction
- The first version of the Atlantic cod genome
- Ongoing efforts to improve the Atlantic cod genome assembly
- Acknowledgments
- Glossary
- 2: The rainbow trout genome, an important landmark for aquaculture and genome evolution
- Abstract
- Rainbow trout
- The rainbow trout genome: diversity, structure, organization
- A genome for genetic and functional investigations
- Future directions and concluding remarks: resources are still expending
- 3: An improved version of the Atlantic cod genome and advancements in functional genomics: implications for the future of cod farming
- Abstract
- The Atlantic cod fisheries—and the rebirth of cod aquaculture
- Immunogenomics—the unusual immune system of Atlantic cod
- Atlantic cod functional genomics research
- Generation of a new version of the Atlantic cod genome
- Annotation using MAKER2
- Tandem repeat content—assembly and biological implications
- An improved Atlantic cod genome—a valuable resource for biological inferences, fisheries management and the future cod aquaculture
- 4: Catfish genomic studies: progress and perspectives
- Abstract
- Introduction
- The genome: structure and organization
- The transcriptome: expression and function
- The genome: single nucleotide polymorphisms and genomic variations
- The genome: its relationship with phenome
- Future directions
- Concluding remarks
- 5: Tilapia genomic studies
- Abstract
- Introduction
- Life history
- The genome: structure and organization
- Functional and applied aspects
- Future direction and aspects
- Conclusions
- Acknowledgments
- 6: Turbot (Scophthalmus maximus) genomic resources: application for boosting aquaculture production
- Abstract
- Biology and aquaculture
- Genomic resources
- Genetic architecture and function of productive traits
- Concluding remarks and perspectives
- 7: Zebrafish offer aquaculture research their services
- Abstract
- Introduction
- The Genome: diversity, structure and organization
- Functional and applied aspects of systems biology
- Future directions future perspectives
- Acknowledgments
- 8: Current status in other finfish species: Description of current genomic resources for the gilthead seabream (Sparus aurata) and soles (Solea senegalensis and Solea solea)
- Abstract
- Introduction
- Transcriptome resources and their main characteristics in gilthead seabream and soles
- Current genetic maps and genome drafts in gilthead seabream and soles
- Functional and applied aspects using genomic approaches
- Future directions
- Concluding remarks
- Acknowledgments
- 9: Molluscs
- Abstract
- Life history and biology
- Genomes: diversity, structure, and organization
- Functional and applied aspects
- Future directions
- 10: Genomics in the common carp
- Abstract
- Common carp biology and aquaculture
- The genome: diversity, structure, organization, and evolution
- Functional genomics research and applications in the common carp
- Genetic tool development
- Future directions
- Concluding remarks
- Acknowledgments
- 11: Future perspective
- Index
